PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G26560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 331aa    MW: 32544.9 Da    PI: 9.7319
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G26560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.72.8e-4064156192
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 
                      aa+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++++ +
  LPERR02G26560.1  64 AAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSAPAHLR 156
                      689*******************************************************************99987777777777655553333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.2E-3970171IPR005333Transcription factor, TCP
PROSITE profilePS5136927.86171125IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDVAGDAGGG RRPNFPLQLL EKKEEQPCSS SAAGGGGTSS PGGGNGNNGS GPGGAGGEMQ  60
VRKAAPKRSS TKDRHTKVEG RGRRIRMPAL CAARVFQLTR ELGHKTDGET IEWLLQQAEP  120
AVIAATGTGT IPANFTSLNI SLRSSGSSLS APAHLRALPS PAARFGSRAD AWDRVVGLGF  180
PPEGPASSSS SPSPLLLNFH SGSVGAPSGG SGGGGGSGES IWTFPQMSSA AAAAAVYRGS  240
VPGGLHFMNF PAPMALLPGQ QLGLGPVGGS GGGGGGGGEG HMGILAALNA YRTQAATDAA  300
GEQGGGGGGS SQQQQGGGGG ERHQSISTSD S
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057330.0AP005733.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03.
GenBankAP0058480.0AP005848.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624016.11e-101PREDICTED: transcription factor TCP14
SwissprotQ9C9L27e-57TCP15_ARATH; Transcription factor TCP15
TrEMBLA0A0D9VL060.0A0A0D9VL06_9ORYZ; Uncharacterized protein
STRINGBGIOSGA009049-PA1e-131(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.19e-45TCP family protein